Schwessinger Group - Plants, fungi, evolution

The Schwessinger Group officially starts late 2018. We are looking for curious and open minds who are excited by challenges in a welcoming environment.

The science in the 'lab':

We are a highly collaborative and interactive team that studies the interaction of fungi and plants. We use a wide varity of tools reaching from biochemistry, bioinformatics, genomics, to environmental sampling. Modern biology is best mixed by combining good 'old school' biochemistry with modern data science stired with interesting biological questions.

Plants and fungi are simply awesome.

We study these plant-fungi interactions on multiple molecular and temporal scales. This includes many aspects:

  • Detailed molecular interaction studies of plant and fungal proteins leading to disease or immunity. The seconds to days timescale.
  • Detailed genome evolution and adaptation of fungal pathogens, especially the wheat stripe rust fungus, in response to wild and agricultural ecosystems. The months to years timescale.
  • Detailed comparative and population genomics analysis of rust fungi with a focus on wheat rusts, yet looking beyond. The decades to millions of year timescale.

 

Projects in the 'lab' in 2019:

Fungal genomics, evolution, and host adaptation (Summer, Honours, Master, and PhD students)

Detection of fungal pathogens and their associated microbiome (Summer, Honours, and Master students)

 

The science beyond the 'lab':

Beyond being nerds, we aim to contribute to a welcoming and progressive academic environment. Group members are actively encouraged to contribute to community events, outreach science communication, and university commities. For example, group members are part of eLife's Early Career Advisory Board, ambassador for the protocol sharing webpage protocols.io, and chair of the RSB Equity Committee. And of course we love open access and reproducible science.

 

 

 

Members

Leader

Benjamin Schwessinger

Benjamin Schwessinger
Benjamin has been working on plants and fungi in various aspects from signalling to genomics and from biochemistry to...

Masters Student

Projects

Open to students

Not open to students

Publications

# refereed publications: 37

# public preprints: 3

3471 citations (Google Scholar, 06/2018)

 

[OA] represents publication in open access journals

# represents shared first authorship

$ represents corresponding author

Junior researchers supervised by Dr Schwessinger are underlined

Citation data is from Google Scholar, June 2018

 

Peer-reviewed Journal Articles

  1. [OA] Thomas, N.C., Oksenberg, N., Liu, F., Caddell, D., Nalyvayko, A., Nguyen, Y., Schwessinger, B.$, Ronald, P.$, 2017. The Rice XA21 Ectodomain Fused to the Arabidopsis EFR Cytoplasmic Domain Confers Resistance to Xanthomonas oryzae pv. oryzae. PeerJ 6, e4456. Citations = 0
  2. [OA] Schwessinger, B.$, Sperschneider, J., Cuddy, W.$, Miller, M., Garnica, D., Taylor, J., Dodds, P., Figueroa, M., Robert, P., Rathjen, J.$, 2017. A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplome diversity. mBio 9, e02275-17 Citations = 2
  3. [OA] Miller, M.E., Zhang, Y., Omidvar, V., Sperschneider, J., Schwessinger, B., Raley, C., Palmer, J.M., Garnica, D., Upadhyaya, N., Rathjen, J., Taylor, J.M., Park, R.F., Dodds, P.N., Hirsch, C.D., Kianian, S.F., Figueroa, M., 2018. De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust. mBio 9, e01650-17. Citations = 3
  4. [OA] Pornsiriwong, W., Estavillo, G.M., Chan, K.X., Tee, E.E., Ganguly, D., Crisp, P.A., Phua, S.Y., Zhao, C., Qiu, J., Park, J., Yong, M.T., Nisar, N., Yadav, A.K., Schwessinger, B., Rathjen, J., Cazzonelli, C.I., Wilson, P.B., Gilliham, M., Chen, Z.-H., Pogson, B.J., 2017. A chloroplast retrograde signal, 3’-phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination. Elife 6. doi:10.7554/eLife.23361 Citations = 22
  5. [OA] Pruitt, R.N., Joe, A., Zhang, W., Feng, W., Stewart, V., Schwessinger, B., Dinneny, J.R., Ronald, P.C., 2017. A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone. New Phytol. 215, 725–736. doi:10.1111/nph.14609 Citations = 2
  6. [OA] Schwessinger, B.$, 2017. Fundamental wheat stripe rust research in the 21st century. New Phytol. 213, 1625–1631. doi:10.1111/nph.14159 Citations = 13
  7. [OA] Singh, V., Perraki, A., Kim, S.Y., Shrivastava, S., Lee, J.H., Zhao, Y., Schwessinger, B., Oh, M.-H., Marshall-Colon, A., Zipfel, C., Huber, S.C., 2017. Tyrosine-610 in the Receptor Kinase BAK1 Does Not Play a Major Role in Brassinosteroid Signaling or Innate Immunity. Front. Plant Sci. 8. doi:10.3389/fpls.2017.01273 Citations = 0
  8. Thynne, E., Saur, I.M.L., Simbaqueba, J., Ogilvie, H.A., Gonzalez-Cendales, Y., Mead, O., Taranto, A., Catanzariti, A.-M., McDonald, M.C., Schwessinger, B., Jones, D.A., Rathjen, J.P., Solomon, P.S., 2017. Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides. Mol. Plant Pathol. 18, 811–824. doi:10.1111/mpp.12444 Citations = 17
  9. Bahar, O., Mordukhovich, G., Luu, D.D., Schwessinger, B., Daudi, A., Jehle, A.K., Felix, G., Ronald, P.C., 2016. Bacterial Outer Membrane Vesicles Induce Plant Immune Responses. Mol. Plant Microbe Interact. 29, 374–384. doi:10.1094/MPMI-12-15-0270-R Citations = 11
  10. Kohler, A.C., Chen, L.-H., Hurlburt, N., Salvucci, A., Schwessinger, B., Fisher, A.J., Stergiopoulos, I., 2016. Structural Analysis of an Avr4 Effector Ortholog Offers Insight into Chitin Binding and Recognition by the Cf-4 Receptor. Plant Cell 28, 1945–1965. doi:10.1105/tpc.15.00893 Citations = 4
  11. Schwessinger, B., Li, X., Ellinghaus, T.L., Chan, L.J.G., Wei, T., Joe, A., Thomas, N., Pruitt, R., Adams, P.D., Chern, M.S., Petzold, C.J., Liu, C.C. $, Ronald, P.C. $, 2016. A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection. Integr. Biol. 8, 542–545. doi:10.1039/C5IB00232J Citations = 2
  12. [OA] Thomas, N.C.#, Schwessinger, B.#, Liu, F., Chen, H., Wei, T., Nguyen, Y.P., Shaker, I.W.F., Ronald, P.C., 2016. XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves. PeerJ 4, e2446. doi:10.7717/peerj.2446 Citations = 1
  13. Lao, J., Sharma, M.K., Sharma, R., Fernández-Niño, S.M.G., Schmutz, J., Ronald, P.C., Heazlewood, J.L., Schwessinger, B. $, 2015. Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum). Proteomics 15, 2286–2290. doi:10.1002/pmic.201400487 Citations = 7
  14. [OA] Pruitt, R.N.#, Schwessinger, B. #,$, Joe, A., Thomas, N., Liu, F., Albert, M., Robinson, M.R., Chan, L.J.G., Luu, D.D., Chen, H., Bahar, O., Daudi, A., Vleesschauwer, D.D., Caddell, D., Zhang, W., Zhao, X., Li, X., Heazlewood, J.L., Ruan, D., Majumder, D., Chern, M., Kalbacher, H., Midha, S., Patil, P.B., Sonti, R.V., Petzold, C.J., Liu, C.C., Brodbelt, J.S., Felix, G., Ronald, P.C.$, 2015. The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium. Science Advances 1, e1500245. doi:10.1126/sciadv.1500245 Citations = 67
  15. [OA] Schwessinger, B. #, Bahar, O. #, Thomas, N., Holton, N., Nekrasov, V., Ruan, D., Canlas, P.E., Daudi, A., Petzold, C.J., Singan, V.R., Kuo, R., Chovatia, M., Daum, C., Heazlewood, J.L., Zipfel, C., Ronald, P.C., 2015a. Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses. PLoS Pathog 11, e1004809. doi:10.1371/journal.ppat.1004809 Citations = 47
  16. [OA] Schwessinger, B. $, Bart, R., Krasileva, K.V., Coaker, G. $, 2015. Focus issue on plant immunity: from model systems to crop species. Front. Plant Sci 6, 195. doi:10.3389/fpls.2015.00195 Citations = 5
  17. Schwessinger, B.$, Rathjen, J.P.$, 2015. Changing SERKs and priorities during plant life. Trends in Plant Science 20, 531–533. doi:10.1016/j.tplants.2015.06.006 Citations = 9
  18. [OA] Cain, B., Budke, J.M., Wood, K.J., Sweeney, N.T., Schwessinger, B.$, 2014. How postdocs benefit from building a union. eLife Sciences 3, e05614. doi:10.7554/eLife.05614 Citations = 6
  19. [OA] Chen, X.#, Zuo, S.#, Schwessinger, B.#, Chern, M., Canlas, P.E., Ruan, D., Zhou, X., Wang, J., Daudi, A., Petzold, C.J., Heazlewood, J.L., Ronald, P.C., 2014. An XA21-Associated Kinase (OsSERK2) Regulates Immunity Mediated by the XA21 and XA3 Immune Receptors. Molecular Plant 7, 874–892. doi:10.1093/mp/ssu003 Citations = 68
  20. Macho, A.P. #, Schwessinger, B. #, Ntoukakis, V. #, Brutus, A., Segonzac, C., Roy, S., Kadota, Y., Oh, M.-H., Sklenar, J., Derbyshire, P., Lozano-Durán, R., Malinovsky, F.G., Monaghan, J., Menke, F.L., Huber, S.C., He, S.Y., Zipfel, C., 2014. A Bacterial Tyrosine Phosphatase Inhibits Plant Pattern Recognition Receptor Activation. Science 343, 1509–1512. doi:10.1126/science.1248849 Citations = 71
  21. Malinovsky, F.G., Batoux, M., Schwessinger, B., Youn, J.H., Stransfeld, L., Win, J., Kim, S.-K., Zipfel, C., 2014. Antagonistic Regulation of Growth and Immunity by the Arabidopsis Basic Helix-Loop-Helix Transcription Factor HOMOLOG OF BRASSINOSTEROID ENHANCED EXPRESSION2 INTERACTING WITH INCREASED LEAF INCLINATION1 BINDING bHLH1. Plant Physiol. 164, 1443–1455. doi:10.1104/pp.113.234625 Citations = 60
  22. Zuo, S., Zhou, X., Chen, M., Zhang, S., Schwessinger, B., Ruan, D., Yuan, C., Wang, J., Chen, X., Ronald, P.C., 2014. OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae. J. Integr. Plant Biol. 56, 1179–1192. doi:10.1111/jipb.12290 Citations = 13
  23. [OA] Bahar, O.#, Pruitt, R.#, Luu, D.D., Schwessinger, B., Daudi, A., Liu, F., Ruan, R., Fontaine-Bodin, L., Koebnik, R., Ronald, P., 2014. The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles. PeerJ 2, e242. doi:10.7717/peerj.242 Citations = 39
  24. Albrecht, C.#, Boutrot, F.#, Segonzac, C., Schwessinger, B., Gimenez-Ibanez, S., Chinchilla, D., Rathjen, J.P., Vries, S.C. de, Zipfel, C., 2012. Brassinosteroids inhibit pathogen-associated molecular pattern–triggered immune signaling independent of the receptor kinase BAK1. PNAS 109, 303–308. doi:10.1073/pnas.1109921108 Citations = 229
  25. Dardick, C., Schwessinger, B., Ronald, P., 2012. Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures. Curr Opin Plant Biol 15, 358–66. doi:10.1016/j.pbi.2012.05.002 Citations = 55
  26. [OA] Han, S.-W. #, Lee, S.-W. #, Bahar, O., Schwessinger, B., Robinson, M.R., Shaw, J.B., Madsen, J.A., Brodbelt, J.S., Ronald, P.C., 2012. Tyrosine sulfation in a Gram-negative bacterium. Nat Commun 3, 1153. doi:10.1038/ncomms2157 Citations = 39
  27. Schwessinger, B., Ronald, P.C., 2012. Plant innate immunity: perception of conserved microbial signatures. Annu Rev Plant Biol 63, 451–482. doi:10.1146/annurev-arplant-042811-105518 Citations = 223
  28. Wang, E.#, Schornack, S.#, Marsh, J.F., Gobbato, E., Schwessinger, B., Eastmond, P., Schultze, M., Kamoun, S., Oldroyd, G.E.D., 2012. A Common Signaling Process that Promotes Mycorrhizal and Oomycete Colonization of Plants. Current Biology 22, 2242–2246. doi:10.1016/j.cub.2012.09.043 Citations = 170
  29. Ntoukakis, V.#, Schwessinger, B.#, Segonzac, C., Zipfel, C., 2011. Cautionary notes on the use of C-terminal BAK1 fusion proteins for functional studies. Plant Cell 23, 3871–8. doi:10.1105/tpc.111.090779 Citations = 49
  30. Roux, M.#, Schwessinger, B.#, Albrecht, C., Chinchilla, D., Jones, A., Holton, N., Malinovsky, F.G., Tor, M., de Vries, S., Zipfel, C., 2011. The Arabidopsis Leucine-Rich Repeat Receptor-Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens. Plant Cell 23, 2440–55. doi:10.1105/tpc.111.084301 Citations = 387
  31. [OA] Schwessinger, B., Roux, M., Kadota, Y., Ntoukakis, V., Sklenar, J., Jones, A., Zipfel, C., 2011. Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1. PLoS Genet 7, e1002046. doi:10.1371/journal.pgen.1002046 Citations = 293
  32. [OA] Haas, B.J., Kamoun, S., Zody, M.C., Jiang, R.H., Handsaker, R.E., Cano, L.M., Grabherr, M., Kodira, C.D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T.O., Ah-Fong, A.M., Alvarado, L., Anderson, V.L., Armstrong, M.R., Avrova, A., Baxter, L., Beynon, J., Boevink, P.C., Bollmann, S.R., Bos, J.I., Bulone, V., Cai, G., Cakir, C., Carrington, J.C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M.A., Fugelstad, J., Gilroy, E.M., Gnerre, S., Green, P.J., Grenville-Briggs, L.J., Griffith, J., Grunwald, N.J., Horn, K., Horner, N.R., Hu, C.H., Huitema, E., Jeong, D.H., Jones, A.M., Jones, J.D., Jones, R.W., Karlsson, E.K., Kunjeti, S.G., Lamour, K., Liu, Z., Ma, L., Maclean, D., Chibucos, M.C., McDonald, H., McWalters, J., Meijer, H.J., Morgan, W., Morris, P.F., Munro, C.A., O’Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D.C., Schumann, U.D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D.J., Sykes, S., Thines, M., van de Vondervoort, P.J., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W., Meyers, B.C., van West, P., Ristaino, J., Govers, F., Birch, P.R., Whisson, S.C., Judelson, H.S., Nusbaum, C., 2009. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461, 393–8. doi:10.1038/nature08358 Citations = 924
  33. Nekrasov, V., Li, J., Batoux, M., Roux, M., Chu, Z.H., Lacombe, S., Rougon, A., Bittel, P., Kiss-Papp, M., Chinchilla, D., van Esse, H.P., Jorda, L., Schwessinger, B., Nicaise, V., Thomma, B.P., Molina, A., Jones, J.D., Zipfel, C., 2009. Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. Embo J 28, 3428–38. doi:10.1038/emboj.2009.262 Citations = 214
  34. Conti, L., Price, G., O’Donnell, E., Schwessinger, B., Dominy, P., Sadanandom, A., 2008. Small ubiquitin-like modifier proteases OVERLY TOLERANT TO SALT1 and -2 regulate salt stress responses in Arabidopsis. Plant Cell 20, 2894–908. doi:10.1105/tpc.108.058669 Citations = 120
  35. Schwessinger, B., Zipfel, C., 2008. News from the frontline: recent insights into PAMP-triggered immunity in plants. Curr Opin Plant Biol 11, 389–95. doi:10.1016/j.pbi.2008.06.001 Citations = 293

 

Peer-reviewed book chapter

  1. Schwessinger, B. $, Rathjen, J.P., 2017. Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing. Methods Mol. Biol. 1659, 49–57. doi:10.1007/978-1-4939-7249-4_5 Citations = 1
  2. Jones, J., Zipfel, C., Schwessinger, B., Roux, M., 2008. Genetic analysis of PAMP-triggered immunity in Arabidopsis, Biology of Plant-Microbe Interactions. International Society for Molecular Plant-Microbe Interactions, St. Paul, Minnesota. Citations = unknown

 

Publicly available preprints

  1. [OA] McDonald, M.#, Schwessinger, B.#, Stewart, V., Ronald, P., 2017. Distribution and inheritance of a gene cluster encoding a sulfated tyrosine peptide in Xanthomonas spp. bioRxiv 149930. doi:10.1101/149930Citations = 0
  2. [OA] Schalamun, M., Kainer, D., Beavan, E., Nagar, R., Eccles, D., Rathjen, J., Lanfear, R., Schwessinger, B., 2018. A comprehensive toolkit to enable MinION long-read sequencing in any laboratory. bioRxiv 289579. Citations = 0
  3. [OA] Wang, W., Schalamun, M., Suarez, A.M., Kainer, D., Schwessinger, B., Lanfear, R., 2018. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case. bioRxiv 320085. https://doi.org/10.1101/320085

News & events

News

13
Aug
2018
Benjamin had a 10 minute ABC Radio Canberra Drive radio interview about his recent Future Fellowship, plant immunity, wheat, and fungal disease.

Highlights

Benjamin Schwessinger

Group research focus

Updated:  20 September 2018/Responsible Officer:  Director RSB/Page Contact:  Webmaster RSB