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The Australian National University

Solomon Lab - Wheat biosecurity

Teaching | Research | Research opportunities | Lab members | Lab awards | Publications | Grants

Assoc Prof Peter Solomon

Building 134,
Research School of Biology,
The Australian National University,
Acton, ACT 0200
T: 61253952
E: peter.solomon@anu.edu.au

 Biography:

Peter completed his undergraduate degree and subsequent PhD studies at The University of Queensland investigating the role of molybdenum containing enzymes in the photosynthetic bacterium Rhodobacter capsulatus. He then undertook a postdoctoral position at the Carlsberg Laboratory in Denmark investigating the nutritional basis of the tomato-Cladosporium fulvum interaction. In 2000, he moved to the Australian Centre for Necrotrophic Fungal Pathogens located at Murdoch University in Perth to further investigate fungal-plant interactions using the Stagonospora nodorum-wheat interaction. In 2008, Peter accepted a Lab Leader position in the Research School of Biology at The Australian National University where his research group is focused on wheat biosecurity. Recently, Peter was awarded an Australian Research Council Future Fellowship to expand his group's interest to cover the devastating wheat pathogen Mycosphaerella graminicola.

Teaching

BIOL3107 Advances in Medical and Plant Biochemistry (Co-convenor)
BIOL3106 Biosecurity
BIOL3177 Advances in Plant Science
PhB ASC Supervision

Research interests

Fungal diseases of wheat threaten global food security

Stagonospora nodorum
is a fungus that causes leaf and glume blotch disease on wheat (septoria nodorum blotch). This disease causes greater than $100 million dollars in yield losses per annum in Australia alone and has been recently ranked as the third most important disease of wheat in this country. Traditional breeding methods for disease controls have only been partially successful at best and new and innovative anti-fungal strategies are required to prevent disease and secure Australian and global wheat supplies in the future.

  
Wheat Disease
$/ha AUD
Total losses
($M
AUD)
yellow spot17.82212
stripe rust10.62127
septoria nodorum blotch9.07108
crown rot6.6379
Pratylenchus neglectus6.1373
Total losses from others26.37314
Total present loss76.94913
                            
Not only is S. nodorum a threat to global food security, its also extremely interesting and versatile to work with! S. nodorum can be cultured in the lab and is amenable to many common genetic techniques such as targeted gene disruption and gene overexpression. The genome sequence has been completed and extensive proteomics and metabolomics resources have been developed making S. nodorum a perfect model pathogen to better understand plant-pathogen interactions.



                       



Current projects

Asexual Sporulation in Stagonospora nodorum

To understand the molecular mechanisms of asexual sporulation in the pathogen Stagonospora nodorum        Show more detail...

Effector proteins in necrotrophic wheat pathogens

Effector proteins cause disease! How do they do it?        Show more detail...

Understanding the role and identifying targets of signal transduction in Stagonospora nodorum

What are the targets of signal transduction in fungal pathogens?        Show more detail...

Characterising the Mycosphaerella graminicola-wheat interaction

A primary biosecurity threat to the Australian wheat industry        Show more detail...

Mycotoxin discovery and characterisation

What mycotoxic compounds do necrotrophic fungal pathogens of wheat produce and what is their role?        Show more detail...

Student research opportunities

Are you interested in global food security?

What about an Honours scholarship?        Show more detail...

PhD projects are now available

A variety of PhD projects are now available focussing on solving wheat diseases        Show more detail...


PhD and Honours students should note that as many of the projects in the Solomon lab are focussed solving problems within the Australian wheat industries, substantial scholarship top-ups are possible through the Grains Research and Development Corporation.

Lab members

  • Eva Antoni (PhD student)
  • Susan Breen (Postdoctoral Fellow)
  • Liam Cassidy (PhD student)
  • Yit Heng Chooi (Research Fellow)
  • Lauren Du Fall (PhD student)
  • Megan McDonald (Visiting Fellow)
  • Mariano Jordi Muria Gonzalez (PhD student)
  • Peter Solomon (Lab Leader)
  • Elisha Thynne (PhD student)
  • Melanie Bettina Wagner (Visiting PhD Student)
  • Britta Winterberg (Postdoctoral Fellow)
  • Hulson Zhang (PhD student)

» Go to lab directory

Solomon lab - April 2013

 

The 2012 Solomon lab retreat!

Every year, the Solomon lab takes the opportunity to visit the nearby snowfields. Here are some photos from this year's trip ... thanks to our champion snowboarder (and skier!) Mirka for the photos!





             
         
       


2012 Wagga wagga field trip

In October, we were kindly hosted by Dr. Andrew Milgate and Mr. Kurt Lindbeck (NSW DPI) on a tour of various infected wheat, barley and canola trials at Wagga wagga. This was a fantastic opportunity to have a look at the diseases in the field that we normally only see under a microscope! 

  
  



 2012 Kioloa Plant-Microbe Interactions Retreat

 In December 2012, the labs within the Plant-Microbe Interactions discipline held a retreat at the ANU coastal campus ay Kioloa. This provided a great opportunity to not only engage with like-minded scientists to discuss our research, but also interact socially. Below is a photo of the lab taken on the beach near the conference facilities ...

                      




Lab awards and achievements

  • Melanie Wagner, won the APPS Poster Prize at the 2012 COMBIO conference in Adelaide
  • Lauren Du Fall, won the Hiroto Naora Award for Student Academic Achievement in Plant Sciences, 2011
  • Peter Solomon, awarded an Australian Research Council Future Fellowship, 2011
  • Peter Solomon, featured in the Winter 2011 ANU Reporter magazine
  • Liam Cassidy, Best Student Poster, Lorne Proteomics Conference, Lorne 2010 
  • Lauren Du Fall, Best Plant Poster, 2nd Australasian Metabolomics Conference, Melbourne 2010

Publications

Selected publications

1. Title: A functional genomics approach to dissect the mode of action of the Stagonospora nodorum effector protein SnToxA in wheat
Author(s): Vincent, Delphine; Du Fall, Lauren A.; Livk, Andreja; et al.
Source: Molecular Plant Pathology Volume: 13 Issue: 5 Pages: 467-482 Published: JUN 2012
Times Cited: 1
DOI: 10.1111/j.1364-3703.2011.00763.x
added
30-May-12
2. Title: Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts.
Author(s): Gardiner, Donald M; McDonald, Megan C; Covarelli, Lorenzo; et al.
Source: PLoS pathogens Volume: 8 Issue: 9 Pages: e1002952 Published: 2012-Sep
DOI: 10.1371/journal.ppat.1002952
added
29-Oct-12
3. Title: Metabolomics protocols for filamentous fungi.
Author(s): Gummer, Joel P A; Krill, Christian; Du Fall, Lauren; et al.
Source: Methods in molecular biology (Clifton, N.J.) Volume: 835 Pages: 237-54 Published: 2012
added
30-May-12
4. Title: Proteomic techniques for plant-fungal interactions.
Author(s): Vincent, Delphine; Tan, Kar-Chun; Cassidy, Liam; et al.
Source: Methods in molecular biology (Clifton, N.J.) Volume: 835 Pages: 75-96 Published: 2012
added
30-May-12
5. Title: Stagonospora nodorum: From Pathology to Genomics and Host Resistance.
Author(s): Oliver, Richard P; Friesen, Timothy L; Faris, Justin D; et al.
Source: Annual review of phytopathology Volume: 50 Pages: 23-43 Published: 2012-Sep-8
added
10-Oct-12
6. Title: The Cysteine Rich Necrotrophic Effector SnTox1 Produced by Stagonospora nodorum Triggers Susceptibility of Wheat Lines Harboring Snn1
Author(s): Liu, Zhaohui; Zhang, Zengcui; Faris, Justin D.; et al.
Source: Plos Pathogens Volume: 8 Issue: 1 Published: JAN 2012
Times Cited: 7
DOI: 10.1371/journal.ppat.1002467
added
30-May-12
7. Title: Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability
Author(s): Ipcho, Simon V. S.; Hane, James K.; Antoni, Eva A.; et al.
Source: Molecular Plant Pathology Volume: 13 Issue: 6 Pages: 531-545 Published: AUG 2012
Times Cited: 2
DOI: 10.1111/j.1364-3703.2011.00770.x
added
26-Jul-12
8. Title: Development of a sensitive non-targeted method for characterizing the wine volatile profile using headspace solid-phase microextraction comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry
Author(s): Robinson, Anthony L.; Boss, Paul K.; Heymann, Hildegarde; et al.
Source: Journal of Chromatography a Volume: 1218 Issue: 3 Pages: 504-517 Published: JAN 21 2011
Times Cited: 23
DOI: 10.1016/j.chroma.2010.11.008
added
10-Oct-12
9. Title: Impaired Nutrient Signaling and Body Weight Control in a Na+ Neutral Amino Acid Cotransporter (Slc6a19)-deficient Mouse
Author(s): Broeer, Angelika; Juelich, Torsten; Vanslambrouck, Jessica M.; et al.
Source: Journal of Biological Chemistry Volume: 286 Issue: 30 Pages: 26638-26651 Published: JUL 29 2011
Times Cited: 4
DOI: 10.1074/jbc.M111.241323
added
10-Oct-12
10. Title: Influence of Yeast Strain, Canopy Management, and Site on the Volatile Composition and Sensory Attributes of Cabernet Sauvignon Wines from Western Australia
Author(s): Robinson, Anthony L.; Boss, Paul K.; Heymann, Hildegarde; et al.
Source: Journal of Agricultural and Food Chemistry Volume: 59 Issue: 7 Pages: 3273-3284 Published: APR 13 2011
Times Cited: 7
DOI: 10.1021/jf104324d
added
10-Oct-12

All publications

Click here to see a full list of publications on the ISI website...

Recent grants

Recent grants include,

Solomon, P.S. (2012) Understanding the production risks from necrotrophic fungi. Grains Research and Development Corporation. $180,000

Solomon, P.S. (2012) Functional characterisation of the necrotrophic effector proteins Tox1 and Tox3 from the wheat pathogen Stagonospora nodorum. ARC Discovery $350,000.

Solomon, P.S. (2011) The identification of Mycosphaerella graminicola effectors that promote pathogenicity on wheat. ARC Future Fellowship $803,186.

Solomon, P.S. (2011) Australian Necrotrophic Fungal Programme. Grains Research and Development Corporation. $500,000 AUD.

Solomon, P.S., Bringans, S. & Lipscombe, R.J. (2011) The development of mass spectrometry techniques for mapping post-translational modification in the wheat pathogen Stagonospora nodorum. ARC Linkage $90,666.

Solomon, P.S, Rathjen, J.P., Hardham, A., Jones, D. & Mathesius, U. (2010) An AKTA Avant protein purification system to unravel plant disease. ANU Major Equipment Committee Grant $80,000 AUD.

AR Hardham, A.R., Kirk, K., Broer, S., Von Caemmerer, S., Mathesius, U., Solomon, P.S., Masle, J., Saliba, K.J., Pogson, B.J., Parish, C.R., Atkin, O.K., Mahalingam, S., Ball, M.C., Tremethick, D.J., Rolph, M., Djordjevic, M.A., Hill, C.E. (2010) Multiphoton confocal microscope. ARC LIEF $600,000 AUD.

Oliver, R.P. & Solomon, P.S. (2009) Australian Centre for Necrotrophic Fungal Pathogens: Fungal Pathogenicity; Continuation. Grains Research and Development Corporation $473,754 AUD.

Solomon, P.S., Oliver, R.P. and Lipscombe, R.J. (2008) Investigating a new paradigm for plant-pathogen interactions; Identification of host-selective toxin proteins in the wheat pathogen Stagonospora nodorum. ARC Discovery $235,000 AUD.

Solomon, P.S., Oliver, R.P. and Lipscombe, R.J. (2008) Proteome mapping of the model fungal plant pathogen Stagonospora nodorum using LC-LC-MS/MS. ARC Linkage $78,000 AUD.




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